Package: TPACData 0.1.0
TPACData: Human Protein Atlas Data for Tissue-Adjusted Pathway Analysis of Cancer (TPAC)
Contains summary data on gene expression in normal human tissues from the Human Protein Atlas for use with the Tissue-Adjusted Pathway Analysis of cancer (TPAC) method. Frost, H. Robert (2023) "Tissue-adjusted pathway analysis of cancer (TPAC)" <doi:10.1101/2022.03.17.484779>.
Authors:
TPACData_0.1.0.tar.gz
TPACData_0.1.0.zip(r-4.7-any)TPACData_0.1.0.zip(r-4.6-any)TPACData_0.1.0.zip(r-4.5-any)
TPACData_0.1.0.tgz(r-4.6-any)TPACData_0.1.0.tgz(r-4.5-any)
TPACData_0.1.0.tar.gz(r-4.7-any)TPACData_0.1.0.tar.gz(r-4.6-any)
TPACData_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
TPACData/json (API)
| # Install 'TPACData' in R: |
| install.packages('TPACData', repos = c('https://hrobertfrost.r-universe.dev', 'https://cloud.r-project.org')) |
- hpa.data - Gene expression data for normal human tissues from the Human Protein Atlas (HPA). This data was specially processed by the HPA group as FPKM values (file "HPA.normal.FPKM.GDCpipeline.csv") using a pipeline similar to that employed by GDC for the TCGA RNA-seq data.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:bb757506fb. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 86 | ||
| source / vignettes | OK | 174 | ||
| linux-release | OK | 91 | ||
| macos-release | OK | 81 | ||
| macos-oldrel | OK | 100 | ||
| windows-devel | OK | 62 | ||
| windows-release | OK | 64 | ||
| windows-oldrel | OK | 59 | ||
| wasm-release | OK | 83 |
Exports:
Dependencies:data.table
