Package: VAM 1.1.0

VAM: Variance-Adjusted Mahalanobis

Contains logic for cell-specific gene set scoring of single cell RNA sequencing data.

Authors:H. Robert Frost

VAM_1.1.0.tar.gz
VAM_1.1.0.zip(r-4.7-any)VAM_1.1.0.zip(r-4.6-any)VAM_1.1.0.zip(r-4.5-any)
VAM_1.1.0.tgz(r-4.6-any)VAM_1.1.0.tgz(r-4.5-any)
VAM_1.1.0.tar.gz(r-4.7-any)VAM_1.1.0.tar.gz(r-4.6-any)
VAM_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
VAM/json (API)

# Install 'VAM' in R:
install.packages('VAM', repos = c('https://hrobertfrost.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

5.23 score 4 packages 28 scripts 692 downloads 23 mentions 4 exports 3 dependencies

Last updated from:9921c5a7cd. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK169
source / vignettesOK212
linux-releaseOK167
macos-releaseOK123
macos-oldrelOK94
windows-develOK103
windows-releaseOK136
windows-oldrelOK85
wasm-releaseOK109

Exports:createGeneSetCollectionvamvamForCollectionvamForSeurat

Dependencies:latticeMASSMatrix

Seurat pbmc_small log normalization example
Rendered fromVAM_pbmc_small.Rnwusingutils::Sweave

Last update: 2023-11-05
Started: 2021-01-14

Seurat pbmc_small SCTransform example
Rendered fromVAM_pbmc_small_sctransform.Rnwusingutils::Sweave

Last update: 2023-11-05
Started: 2021-02-09

10x PBMC 3k log normalization example
Rendered fromVAM_PBMC3K_LogNormalization.Rnwusingutils::Sweave

Last update: 2021-02-01
Started: 2021-02-01

10x PBMC 3k log normalization Hallmark collection example
Rendered fromVAM_PBMC3K_Hallmark_LogNormalization.Rnwusingutils::Sweave

Last update: 2021-02-01
Started: 2021-02-01

10x PBMC 3k SCTransform example
Rendered fromVAM_PBMC3K_SCTransform.Rnwusingutils::Sweave

Last update: 2021-02-01
Started: 2021-02-01