{ "_id": "6ad478238b78ae42bccc5119", "Package": "RESET", "Type": "Package", "Title": "Reconstruction Set Test", "Version": "1.0.0", "Authors@R": "person(\"H. Robert\", \"Frost\", email=\"rob.frost@dartmouth.edu\", role=c(\"aut\", \"cre\"))", "Description": "Contains logic for sample-level variable set scoring using\nrandomized reduced rank reconstruction error. Frost, H. Robert\n(2023) \"Reconstruction Set Test (RESET): a computationally\nefficient method for single sample gene set testing based on\nrandomized reduced rank reconstruction error\"\n.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-18 07:25:20 UTC", "User": "root" }, "Author": "H. Robert Frost [aut, cre]", "Maintainer": "H. Robert Frost ", "Repository": "https://hrobertfrost.r-universe.dev", "Date/Publication": "2024-03-07 02:27:24 UTC", "RemoteUrl": "https://github.com/cran/RESET", "RemoteRef": "HEAD", "RemoteSha": "d1d93c4ef28f1b33ed92901742963b5b27b5772f", "_user": "hrobertfrost", "_type": "src", "_file": "RESET_1.0.0.tar.gz", "_fileid": "https://r2.ropensci.org/8d9763a8ec319c0f3ea41ade16e220db7813e82abca2d22af6f2e4c9bcaa5a12", "_filesize": 673170, "_sha256": "8d9763a8ec319c0f3ea41ade16e220db7813e82abca2d22af6f2e4c9bcaa5a12", "_expires": "2027-01-26T07:41:22.000Z", "_created": "2026-10-18T07:25:20.000Z", "_published": "2026-10-18T07:41:23.774Z", "_buildurl": "https://github.com/r-universe/hrobertfrost/actions/runs/39107350032", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 117616762183, "time": 187, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12129555641" }, { "job": 117616762169, "time": 169, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12129650205" }, { "job": 117616762180, "time": 137, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12129376582" }, { "job": 117616762220, "time": 131, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12129351614" }, { "job": 117616030826, "time": 237, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12128792821" }, { "job": 117616762364, "time": 128, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12129375521" }, { "job": 117616762190, "time": 108, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12128807852" }, { "job": 117616762281, "time": 108, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12128598358" }, { "job": 117616762257, "time": 97, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12129022566" } ], "_upstream": "https://github.com/cran/RESET", "_commit": { "id": "d1d93c4ef28f1b33ed92901742963b5b27b5772f", "author": "H. Robert Frost ", "committer": "cran-robot ", "message": "version 1.0.0\n", "time": 1709778444 }, "_maintainer": { "name": "H. Robert Frost", "email": "rob.frost@dartmouth.edu", "login": "hrobertfrost", "description": "", "uuid": 217596621 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.6.0", "role": "Depends" }, { "package": "Matrix", "role": "Depends" }, { "package": "methods", "version": ">= 3.6.0", "role": "Imports" }, { "package": "Seurat", "version": ">= 4.0.0", "role": "Suggests" }, { "package": "SeuratObject", "version": ">= 4.0.0", "role": "Suggests" }, { "package": "sctransform", "version": ">= 0.3.2", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "hrobertfrost", "count": 5, "uuid": 217596621 } ], "_userbio": { "uuid": 217596621, "type": "user", "name": "hrobertfrost", "followers": 0 }, "_downloads": { "count": 295, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/RESET" }, "_searchresults": 25, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/RESET.html" ], "_realowner": "hrobertfrost", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2023-04-07" }, { "version": "0.2.0", "date": "2023-08-07" }, { "version": "0.2.1", "date": "2023-08-20" }, { "version": "0.2.2", "date": "2024-03-03" }, { "version": "1.0.0", "date": "2024-03-07" } ], "_exports": [ "convertToPerVarScores", "convertToPerVarScoresForSeurat", "createVarSetCollection", "randomColumnSpace", "randomSVD", "reset", "resetForSeurat", "resetViaPCA" ], "_help": [ { "page": "RESET-package", "title": "Reconstruction Set Test", "topics": [ "RESET-package" ] }, { "page": "ConvertToPerVarScores", "title": "Utility function to that converts RESET scores to/from per-variable scores", "topics": [ "convertToPerVarScores" ] }, { "page": "ConvertToPerVarScoresForSeurat", "title": "Utility function to that converts RESET scores contained in a Seurat object to/from per-variable scores", "topics": [ "convertToPerVarScoresForSeurat" ] }, { "page": "CreateVarSetCollection", "title": "Utility function to help create a variable set collection list object", "topics": [ "createVarSetCollection" ] }, { "page": "RandomColumnSpace", "title": "Implementation of a sparse powered randomized algorithm for computing a basis for the column space of a matrix.", "topics": [ "randomColumnSpace" ] }, { "page": "RandomSVD", "title": "Implementation of a sparse powered randomized singular value decomposition.", "topics": [ "randomSVD" ] }, { "page": "RESET", "title": "Reconstruction Set Test (RESET)", "topics": [ "reset" ] }, { "page": "RESETForSeurat", "title": "RESET wrapper for scRNA-seq data processed using the Seurat framework", "topics": [ "resetForSeurat" ] }, { "page": "RESETViaPCA", "title": "Reconstruction Set Test (RESET) via PCA", "topics": [ "resetViaPCA" ] } ], "_rundeps": [ "lattice", "Matrix" ], "_vignettes": [ { "source": "RESET_PBMC3K_BioCarta_LogNormalization.Rnw", "filename": "RESET_PBMC3K_BioCarta_LogNormalization.pdf", "title": "10x PBMC 3k log normalization MSigDB BioCarta collection example", "engine": "utils::Sweave", "headings": [], "created": "2023-04-07 07:10:02", "modified": "2023-04-07 07:10:02", "commits": 1 }, { "source": "RESET_pbmc_small.Rnw", "filename": "RESET_pbmc_small.pdf", "title": "Seurat pbmc_small log normalization example", "engine": "utils::Sweave", "headings": [], "created": "2023-04-07 07:10:02", "modified": "2023-04-07 07:10:02", "commits": 1 } ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "reset", "_universes": [ "hrobertfrost" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.0", "date": "2026-10-18T07:28:10.000Z", "distro": "resolute", "commit": "d1d93c4ef28f1b33ed92901742963b5b27b5772f", "fileid": "https://r2.ropensci.org/fa624223ca1aba1b93e157b59a2a667cd57bc271c403e836503bc64f373a6438", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hrobertfrost/actions/runs/39107350032" }, { "r": "4.6.1", "os": "linux", "version": "1.0.0", "date": "2026-10-18T07:27:54.000Z", "distro": "resolute", "commit": "d1d93c4ef28f1b33ed92901742963b5b27b5772f", "fileid": "https://r2.ropensci.org/fcabee02425a620e7e80bd1af821c7037547b8d3d8c15f5df8645230bf311416", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hrobertfrost/actions/runs/39107350032" }, { "r": "4.5.3", "os": "mac", "version": "1.0.0", "date": "2026-10-18T07:40:18.000Z", "commit": "d1d93c4ef28f1b33ed92901742963b5b27b5772f", "fileid": "https://r2.ropensci.org/5912a903fe8d54ec148ec96fc46254b91b0279edc05174259f9e1168dc2c572a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hrobertfrost/actions/runs/39107350032" }, { "r": "4.6.1", "os": "mac", "version": "1.0.0", "date": "2026-10-18T07:40:20.000Z", "commit": "d1d93c4ef28f1b33ed92901742963b5b27b5772f", "fileid": "https://r2.ropensci.org/b867aa7f2b5c6903d4db136411d65e49e1cdb94e9f92dd41ea3db2ea4faef7c5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hrobertfrost/actions/runs/39107350032" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.0", "date": "2026-10-18T07:27:45.000Z", "commit": "d1d93c4ef28f1b33ed92901742963b5b27b5772f", "fileid": "https://r2.ropensci.org/5bf808c6a475c5535126616f2fb268c9916ba72a11901c103bc829796dbe5cc1", "status": "success", "buildurl": "https://github.com/r-universe/hrobertfrost/actions/runs/39107350032" }, { "r": "4.7.0", "os": "win", "version": "1.0.0", "date": "2026-10-18T07:26:50.000Z", "commit": "d1d93c4ef28f1b33ed92901742963b5b27b5772f", "fileid": "https://r2.ropensci.org/274b60f4c85b9b43c6c085e4e48aa5240b73596ad523f1e7d15d5d3e57404611", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hrobertfrost/actions/runs/39107350032" }, { "r": "4.5.3", "os": "win", "version": "1.0.0", "date": "2026-10-18T07:26:53.000Z", "commit": "d1d93c4ef28f1b33ed92901742963b5b27b5772f", "fileid": "https://r2.ropensci.org/8e3f6de33613f7fc1aac7032a85d01d8f9afa53407f85ea5dd910a5ac8acc7ec", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hrobertfrost/actions/runs/39107350032" }, { "r": "4.6.1", "os": "win", "version": "1.0.0", "date": "2026-10-18T07:26:43.000Z", "commit": "d1d93c4ef28f1b33ed92901742963b5b27b5772f", "fileid": "https://r2.ropensci.org/b402b5d5133a8a51797393d22609b8d7d2d205dfa431a3c5d01536442cf69744", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hrobertfrost/actions/runs/39107350032" } ] }