Package: RESET 1.0.0
RESET: Reconstruction Set Test
Contains logic for sample-level variable set scoring using randomized reduced rank reconstruction error. Frost, H. Robert (2023) "Reconstruction Set Test (RESET): a computationally efficient method for single sample gene set testing based on randomized reduced rank reconstruction error" <doi:10.1101/2023.04.03.535366>.
Authors:
RESET_1.0.0.tar.gz
RESET_1.0.0.zip(r-4.7-any)RESET_1.0.0.zip(r-4.6-any)RESET_1.0.0.zip(r-4.5-any)
RESET_1.0.0.tgz(r-4.6-any)RESET_1.0.0.tgz(r-4.5-any)
RESET_1.0.0.tar.gz(r-4.7-any)RESET_1.0.0.tar.gz(r-4.6-any)
RESET_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
RESET/json (API)
| # Install 'RESET' in R: |
| install.packages('RESET', repos = c('https://hrobertfrost.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:d1d93c4ef2. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 187 | ||
| source / vignettes | OK | 237 | ||
| linux-release | OK | 169 | ||
| macos-release | OK | 131 | ||
| macos-oldrel | OK | 137 | ||
| windows-devel | OK | 108 | ||
| windows-release | OK | 97 | ||
| windows-oldrel | OK | 108 | ||
| wasm-release | OK | 128 |
Exports:convertToPerVarScoresconvertToPerVarScoresForSeuratcreateVarSetCollectionrandomColumnSpacerandomSVDresetresetForSeuratresetViaPCA
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Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Reconstruction Set Test | RESET-package |
| Utility function to that converts RESET scores to/from per-variable scores | convertToPerVarScores |
| Utility function to that converts RESET scores contained in a Seurat object to/from per-variable scores | convertToPerVarScoresForSeurat |
| Utility function to help create a variable set collection list object | createVarSetCollection |
| Implementation of a sparse powered randomized algorithm for computing a basis for the column space of a matrix. | randomColumnSpace |
| Implementation of a sparse powered randomized singular value decomposition. | randomSVD |
| Reconstruction Set Test (RESET) | reset |
| RESET wrapper for scRNA-seq data processed using the Seurat framework | resetForSeurat |
| Reconstruction Set Test (RESET) via PCA | resetViaPCA |